BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016F03SP1|AL427038
(847 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1341 1309 0.0
>3x_Contig1341
Length = 7901
Score = 1309 bits (627), Expect = 0.0
Identities = 769/844 (91%), Gaps = 3/844 (0%)
Strand = Plus / Minus
Query: 2 acaacaagaccttntattctttctggctcctcggaaaatagtctccagtatatctatcat 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 acaacaagacctt-tattctttctggctcctcggaaaatagtctccagtatatctatcat 6942
Query: 62 ctcttgtttgtcatcaattacaaagttcatcttattgtygtyacctgtyccaaaatcgca 121
|||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 6941 ctcttgtttgtcatcaattacaaagttcatcttattgttgttacctgttccaaaatcgca 6882
Query: 122 catcatatgtytgtbctgatagaagaacataactgtcattggmtcgtaaagctcatacat 181
|||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6881 catcatatgtttgttctgatagaagaacataactgtcattggatcgtaaagctcatacat 6822
Query: 182 ctcgttgaagtcaggcacctctttgatgtcacaaaggtaaatcgcagcaaaattcttcac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6821 ctcgttgaagtcaggcacctctttgatgtcacaaaggtaaatcgcagcaaaattcttcac 6762
Query: 242 tttctcagcaatagamtagagtatctcgtccattagcatacactctttgtkgttgtcagt 301
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6761 tttctcagcaatagaatagagtatctcgtccattagcatacactctttgttgttgtcagt 6702
Query: 302 gccgaatcgtataacamctaayctttccttctctgtaacaatcgcttggtcgacatgcca 361
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 6701 gccgaatcgtataacaactaatctttccttctctgtaacaatcgcttggtcgacatgcca 6642
Query: 362 tcctgtatgcmaatgcggaaggmatacactacccatcctttyctaamagtatgctgtacg 421
|||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||
Sbjct: 6641 tcctgtatgcaaatgcggaaggaatacactacccatccttttctaaaagtatgctgtacg 6582
Query: 422 attgayttavacctgtttaccgtctctcgtctatgcgataaccgtactcaagtcttamat 481
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6581 attgatttaaacctgtttaccgtctctcgtctatgcgataaccgtactcaagtcttaaat 6522
Query: 482 catgtctaavgavagcttatgtccaattctcagatttsvagattctctatagmsctccsc 541
||||||||| || |||||||||||||||||||||||| ||||||| ||||| ||
Sbjct: 6521 catgtctaaagaaagcttatgtccaattctcagattttaagattctttatagatcttttt 6462
Query: 542 catatyyctstcataatgggaaamcytcatatvasvssvggsgakatacatmcvabbsgt 601
||||| || ||||||||||||| | |||||| | || || |||||| | | ||
Sbjct: 6461 catatttctttcataatgggaaaacttcatataataataggtgatatacatacaatttgt 6402
Query: 602 vtatgasgagtgtsagtbtatabacabgggggattggsantggsmgcvtcacattsvysg 661
||||| |||||| ||| |||| ||| |||||||||| | ||| || |||||||
Sbjct: 6401 atatgatgagtgttagtttatatacatgggggattggtattggaagcatcacatttattt 6342
Query: 662 cssakccttctbtsyggtggccatcttaccacctttbtgtacctgtacggcatttgtgtt 721
| | |||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6341 cttatccttctttttggtggccatcttaccacctttttgtacctgtacggcatttgtgtt 6282
Query: 722 taayagagttagatagtcgtccataccaaagtcatcggtgctgggttcaggttcagtttc 781
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6281 taatagagttagatagtcgtccataccaaagtcatcggtgctgggttcaggttcagtttc 6222
Query: 782 ctgtwacttcttgggctgtttccttctttcctgttagattcagctgcctgtgcttccata 841
|||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 6221 ctgtaacttctt-ggctgtttccttctttcctg-tagattcagctgcctgttcttccata 6164
Query: 842 ctat 845
||||
Sbjct: 6163 ctat 6160
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.45 0.720 1.36
Gapped
Lambda K H
1.45 0.720 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3036
Number of Sequences: 1807
Number of extensions: 3036
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 847
length of database: 10,358,551
effective HSP length: 16
effective length of query: 831
effective length of database: 10,329,639
effective search space: 8583930009
effective search space used: 8583930009
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.2 bits)
S1: 11 (23.4 bits)
S2: 48 (100.7 bits)